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Fetch dataset annotations
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API reference:
metaspace.sm_annotation_utils
metaspace.image_processing
metaspace.projects_client
metaspace.types
metaspace2020
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Index
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Index
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B
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C
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D
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E
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F
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I
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J
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M
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R
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V
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Y
A
add_dataset_external_link() (metaspace.sm_annotation_utils.SMInstance method)
add_project_external_link() (metaspace.projects_client.ProjectsClient method)
adducts (metaspace.types.DSConfigIsotopeGeneration attribute)
adducts() (metaspace.sm_annotation_utils.SMDataset property)
all_annotation_images() (metaspace.sm_annotation_utils.SMDataset method)
analysis_version (metaspace.types.DSConfig attribute)
Analyzer (metaspace.types.MetadataMSAnalysis attribute)
annotations() (metaspace.sm_annotation_utils.SMDataset method)
archived (metaspace.types.DatabaseDetails attribute)
archived() (metaspace.sm_annotation_utils.MolecularDB property)
B
BadRequestException
C
charge (metaspace.types.DSConfigIsotopeGeneration attribute)
chem_mods (metaspace.types.DSConfigIsotopeGeneration attribute)
clip_hotspots() (in module metaspace.image_processing)
code (metaspace.types.DatasetDownloadLicense attribute)
colocalization() (in module metaspace.image_processing)
colocalization_matrix() (in module metaspace.image_processing)
Condition (metaspace.types.MetadataSampleInformation attribute)
config() (metaspace.sm_annotation_utils.SMDataset property)
contributors (metaspace.types.DatasetDownload attribute)
copy_optical_image() (metaspace.sm_annotation_utils.SMInstance method)
countAnnotations() (metaspace.sm_annotation_utils.GraphQLClient method)
create_database() (metaspace.sm_annotation_utils.GraphQLClient method)
(metaspace.sm_annotation_utils.SMInstance method)
create_dataset() (metaspace.sm_annotation_utils.GraphQLClient method)
current_user_id() (metaspace.sm_annotation_utils.SMInstance method)
currentUserRole (metaspace.projects_client.ProjectDict attribute)
D
data (metaspace.types.DatasetDiagnostic attribute)
Data_Type (metaspace.types.Metadata attribute)
database (metaspace.types.DatasetDiagnostic attribute)
database() (metaspace.sm_annotation_utils.SMInstance method)
database_details() (metaspace.sm_annotation_utils.SMDataset property)
database_ids (metaspace.types.DSConfig attribute)
DatabaseDetails (class in metaspace.types)
databases() (metaspace.sm_annotation_utils.SMInstance method)
dataset() (metaspace.sm_annotation_utils.SMInstance method)
DatasetDiagnostic (class in metaspace.types)
DatasetDownload (class in metaspace.types)
DatasetDownloadContributor (class in metaspace.types)
DatasetDownloadFile (class in metaspace.types)
DatasetDownloadLicense (class in metaspace.types)
DatasetGroup (class in metaspace.types)
DatasetNotFound
DatasetProject (class in metaspace.types)
datasets() (metaspace.sm_annotation_utils.SMInstance method)
DatasetUser (class in metaspace.types)
decoy_sample_size (metaspace.types.DSConfigFDR attribute)
delete_database() (metaspace.sm_annotation_utils.GraphQLClient method)
(metaspace.sm_annotation_utils.SMInstance method)
delete_dataset() (metaspace.sm_annotation_utils.GraphQLClient method)
(metaspace.sm_annotation_utils.SMInstance method)
Detector_Resolving_Power (metaspace.types.MetadataMSAnalysis attribute)
diagnostic() (metaspace.sm_annotation_utils.SMDataset method)
DiagnosticImage (class in metaspace.types)
diagnostics() (metaspace.sm_annotation_utils.SMDataset method)
download_links() (metaspace.sm_annotation_utils.SMDataset method)
download_to_dir() (metaspace.sm_annotation_utils.SMDataset method)
DSConfig (class in metaspace.types)
DSConfigFDR (class in metaspace.types)
DSConfigImageGeneration (class in metaspace.types)
DSConfigIsotopeGeneration (class in metaspace.types)
E
ExternalLink (class in metaspace.projects_client)
externalLinks (metaspace.projects_client.ProjectDict attribute)
F
fdr (metaspace.types.DSConfig attribute)
filename (metaspace.types.DatasetDownloadFile attribute)
files (metaspace.types.DatasetDownload attribute)
format (metaspace.types.DiagnosticImage attribute)
G
get_all_projects() (metaspace.projects_client.ProjectsClient method)
get_dataset_diagnostics() (metaspace.sm_annotation_utils.GraphQLClient method)
get_jwt() (metaspace.sm_annotation_utils.GraphQLClient method)
get_my_projects() (metaspace.projects_client.ProjectsClient method)
get_optical_image_path() (metaspace.sm_annotation_utils.SMInstance method)
get_optical_image_transform() (metaspace.sm_annotation_utils.SMInstance method)
get_primary_group_id() (metaspace.sm_annotation_utils.GraphQLClient method)
get_project() (metaspace.projects_client.ProjectsClient method)
get_visible_databases() (metaspace.sm_annotation_utils.GraphQLClient method)
getAnnotations() (metaspace.sm_annotation_utils.GraphQLClient method)
getDataset() (metaspace.sm_annotation_utils.GraphQLClient method)
getDatasetByName() (metaspace.sm_annotation_utils.GraphQLClient method)
getDatasets() (metaspace.sm_annotation_utils.GraphQLClient method)
getRawOpticalImage() (metaspace.sm_annotation_utils.GraphQLClient method)
getRegisteredImage() (metaspace.sm_annotation_utils.GraphQLClient method)
GraphQLClient (class in metaspace.sm_annotation_utils)
GraphQLException
group() (metaspace.sm_annotation_utils.SMDataset property)
I
id (metaspace.projects_client.ProjectDict attribute)
(metaspace.types.DatabaseDetails attribute)
(metaspace.types.DatasetDiagnostic attribute)
(metaspace.types.DatasetGroup attribute)
(metaspace.types.DatasetProject attribute)
(metaspace.types.DatasetUser attribute)
id() (metaspace.sm_annotation_utils.MolecularDB property)
(metaspace.sm_annotation_utils.SMDataset property)
image (metaspace.types.DiagnosticImage attribute)
image_generation (metaspace.types.DSConfig attribute)
image_size() (metaspace.sm_annotation_utils.SMDataset property)
images (metaspace.types.DatasetDiagnostic attribute)
index (metaspace.types.DiagnosticImage attribute)
institution (metaspace.types.DatasetDownloadContributor attribute)
instrument (metaspace.types.DSConfigIsotopeGeneration attribute)
InvalidResponseException
ion_image_to_optical() (metaspace.sm_annotation_utils.OpticalImage method)
Ionisation_Source (metaspace.types.MetadataMSAnalysis attribute)
is_public() (metaspace.sm_annotation_utils.MolecularDB property)
isocalc_sigma (metaspace.types.DSConfigIsotopeGeneration attribute)
isotope_generation (metaspace.types.DSConfig attribute)
isotope_images() (metaspace.sm_annotation_utils.SMDataset method)
IsotopeImages (class in metaspace.sm_annotation_utils)
isPublic (metaspace.projects_client.ProjectDict attribute)
(metaspace.types.DatabaseDetails attribute)
iterQuery() (metaspace.sm_annotation_utils.GraphQLClient method)
J
jobId (metaspace.types.DatasetDiagnostic attribute)
K
key (metaspace.types.DiagnosticImage attribute)
L
license (metaspace.types.DatasetDownload attribute)
link (metaspace.projects_client.ExternalLink attribute)
(metaspace.types.DatasetDownloadFile attribute)
(metaspace.types.DatasetDownloadLicense attribute)
listQuery() (metaspace.sm_annotation_utils.GraphQLClient method)
M
MALDI_Matrix (metaspace.types.MetadataSamplePreparation attribute)
MALDI_Matrix_Application (metaspace.types.MetadataSamplePreparation attribute)
map_database_name_to_name_version() (metaspace.sm_annotation_utils.GraphQLClient static method)
map_database_to_id() (metaspace.sm_annotation_utils.GraphQLClient method)
Metadata (class in metaspace.types)
metadata() (metaspace.sm_annotation_utils.SMDataset property)
MetadataMSAnalysis (class in metaspace.types)
MetadataPixelSize (class in metaspace.types)
MetadataResolvingPower (class in metaspace.types)
MetadataSampleInformation (class in metaspace.types)
MetadataSamplePreparation (class in metaspace.types)
metaspace.image_processing
module
metaspace.projects_client
module
metaspace.sm_annotation_utils
module
metaspace.types
module
MetaspaceException
min_px (metaspace.types.DSConfigImageGeneration attribute)
module
metaspace.image_processing
metaspace.projects_client
metaspace.sm_annotation_utils
metaspace.types
MOLECULAR_DB_FIELDS (metaspace.sm_annotation_utils.GraphQLClient attribute)
MolecularDB (class in metaspace.sm_annotation_utils)
MS_Analysis (metaspace.types.Metadata attribute)
mz (metaspace.types.MetadataResolvingPower attribute)
N
n_levels (metaspace.types.DSConfigImageGeneration attribute)
n_peaks (metaspace.types.DSConfigIsotopeGeneration attribute)
name (metaspace.projects_client.ProjectDict attribute)
(metaspace.types.DatabaseDetails attribute)
(metaspace.types.DatasetDownloadContributor attribute)
(metaspace.types.DatasetDownloadLicense attribute)
(metaspace.types.DatasetGroup attribute)
(metaspace.types.DatasetProject attribute)
(metaspace.types.DatasetUser attribute)
name() (metaspace.sm_annotation_utils.MolecularDB property)
(metaspace.sm_annotation_utils.SMDataset property)
neutral_losses (metaspace.types.DSConfigIsotopeGeneration attribute)
numDatasets (metaspace.projects_client.ProjectDict attribute)
O
optical_images() (metaspace.sm_annotation_utils.SMDataset method)
OpticalImage (class in metaspace.sm_annotation_utils)
Organism (metaspace.types.MetadataSampleInformation attribute)
Organism_Part (metaspace.types.MetadataSampleInformation attribute)
P
peak() (metaspace.sm_annotation_utils.IsotopeImages method)
Pixel_Size (metaspace.types.MetadataMSAnalysis attribute)
plot() (metaspace.sm_annotation_utils.IsotopeImages method)
Polarity (metaspace.types.MetadataMSAnalysis attribute)
polarity() (metaspace.sm_annotation_utils.SMDataset property)
ppm (metaspace.types.DSConfigImageGeneration attribute)
principal_investigator() (metaspace.sm_annotation_utils.SMDataset property)
ProjectDict (class in metaspace.projects_client)
projects() (metaspace.sm_annotation_utils.SMDataset property)
(metaspace.sm_annotation_utils.SMInstance property)
ProjectsClient (class in metaspace.projects_client)
provider (metaspace.projects_client.ExternalLink attribute)
publicationStatus (metaspace.projects_client.ProjectDict attribute)
(metaspace.types.DatasetProject attribute)
Q
query() (metaspace.sm_annotation_utils.GraphQLClient method)
R
remove_dataset_external_link() (metaspace.sm_annotation_utils.SMInstance method)
remove_project_external_link() (metaspace.projects_client.ProjectsClient method)
reprocess_dataset() (metaspace.sm_annotation_utils.SMInstance method)
Resolving_Power (metaspace.types.MetadataResolvingPower attribute)
results() (metaspace.sm_annotation_utils.SMDataset method)
S
s3dir() (metaspace.sm_annotation_utils.SMDataset property)
Sample_Growth_Conditions (metaspace.types.MetadataSampleInformation attribute)
Sample_Information (metaspace.types.Metadata attribute)
Sample_Preparation (metaspace.types.Metadata attribute)
Sample_Stabilisation (metaspace.types.MetadataSamplePreparation attribute)
save_login() (metaspace.sm_annotation_utils.SMInstance method)
shortName (metaspace.types.DatasetGroup attribute)
SMDataset (class in metaspace.sm_annotation_utils)
SMInstance (class in metaspace.sm_annotation_utils)
Solvent (metaspace.types.MetadataSamplePreparation attribute)
status() (metaspace.sm_annotation_utils.SMDataset property)
submit_dataset() (metaspace.sm_annotation_utils.SMInstance method)
submitter() (metaspace.sm_annotation_utils.SMDataset property)
T
tic_image() (metaspace.sm_annotation_utils.SMDataset method)
Tissue_Modification (metaspace.types.MetadataSamplePreparation attribute)
to_ion_image() (metaspace.sm_annotation_utils.OpticalImage method)
type (metaspace.types.DatasetDiagnostic attribute)
U
update_database() (metaspace.sm_annotation_utils.GraphQLClient method)
(metaspace.sm_annotation_utils.SMInstance method)
update_dataset() (metaspace.sm_annotation_utils.GraphQLClient method)
(metaspace.sm_annotation_utils.SMInstance method)
update_dataset_dbs() (metaspace.sm_annotation_utils.SMInstance method)
upload_optical_image() (metaspace.sm_annotation_utils.SMInstance method)
upload_raw_opt_image_to_s3() (metaspace.sm_annotation_utils.SMInstance method)
url (metaspace.types.DiagnosticImage attribute)
urlSlug (metaspace.projects_client.ProjectDict attribute)
V
version (metaspace.types.DatabaseDetails attribute)
version() (metaspace.sm_annotation_utils.MolecularDB property)
X
Xaxis (metaspace.types.MetadataPixelSize attribute)
Y
Yaxis (metaspace.types.MetadataPixelSize attribute)
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